PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000100.1_g00044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 276aa    MW: 30970.7 Da    PI: 8.8777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000100.1_g00044.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-21132181255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Itr_sc000100.1_g00044.1 132 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDRAAIEFRG 181
                              59*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.974132189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-32132189IPR001471AP2/ERF domain
SMARTSM003802.5E-39132195IPR001471AP2/ERF domain
PfamPF008476.1E-15132181IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23132189IPR016177DNA-binding domain
PRINTSPR003673.8E-12133144IPR001471AP2/ERF domain
CDDcd000182.39E-32133188No hitNo description
PRINTSPR003673.8E-12155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQRIPKRVKQ AEVFSSAQAP PRLTGEEEYS VMVTALKHVI DGSAAAMESN FDHFFTPFQS  60
LSAASTFTST AASWPPSTAR TELPPVFRVP EGHTCQFCEI KGCLGCNFFG APEIGAEDKN  120
KKKNAGKKKK KNYRGVRQRP WGKWAAEIRD PRKAARVWLG TFNTAEEAAR AYDRAAIEFR  180
GPRAKLNFSF TDYTSYAPLE QSTSSVSSSH HHPPPQPLYL QQQQQQSPQN MEFLAGTRKE  240
KQVWESAGEQ DFQDWMMMMD FNADSSDSAS GNLHSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23129188262ATERF1
3gcc_A4e-23129188262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131GKKKKKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502425.14e-79PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-38EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLM1CFE51e-74M1CFE5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663434e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.19e-32redox responsive transcription factor 1